منابع مشابه
Pathway analysis in metabolic databases via differetial metabolic display (DMD)
MOTIVATION A number of metabolic databases are available electronically, some with features for querying and visualizing metabolic pathways and regulatory networks. We present a unifying, systematic approach based on PETRI nets for storing, displaying, comparing, searching and simulating such nets from a number of different sources. RESULTS Information from each data source is extracted and c...
متن کاملMetabolic pathway analysis web service (Pathway Hunter Tool at CUBIC)
MOTIVATION Pathway Hunter Tool (PHT), is a fast, robust and user-friendly tool to analyse the shortest paths in metabolic pathways. The user can perform shortest path analysis for one or more organisms or can build virtual organisms (networks) using enzymes. Using PHT, the user can also calculate the average shortest path (Jungnickel, 2002 Graphs, Network and Algorithm. Springer-Verlag, Berlin)...
متن کاملAnalysis of the Lactobacillus metabolic pathway.
We performed analyses of the phenotypic and genotypic relationships focusing on biosyntheses of amino acids, purine/pyrimidines, and cofactors in three Lactobacillus strains. We found that Lactobacillus fermentum IFO 3956 perhaps synthesized para-aminobenzoate (PABA), an intermediate of folic acid biosynthesis, by an alternative pathway.
متن کاملAnalysis and Comparison of Metabolic Pathway Databases
Enormous amounts of data result from genome sequencing projects and new experimental methods. Within this tremendous amount of genomic data 30-40 per cent of the genes being identified in an organism remain unknown in terms of their biological function. As a consequence of this lack of information the overall schema of all the biological functions occurring in a specific organism cannot be prop...
متن کاملIn Silico Metabolic Pathway Modeling and Analysis of Mycoplasma pneumoniae
Completion of genome projects gives us a lot of information to deal with and analyze. From the genomic sequence data, cellular information can be obtained. The complexity of cellular processes can be analyzed not only by the individual components but also by the systematic approaches. However in general, these approaches are limited by the lack of kinetic information on the metabolism. The ulti...
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ژورنال
عنوان ژورنال: The FASEB Journal
سال: 2013
ISSN: 0892-6638,1530-6860
DOI: 10.1096/fasebj.27.1_supplement.327.3